../../tmp/servers/virsirnadb/2027740128
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1280 | 1 | gcaggaagcagctaacata | 19 | |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 1028 | _.................. | 1045 | 94 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 1028 | _.................. | 1045 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 1028 | _.................. | 1045 | 94 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 1028 | _.................. | 1045 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 1028 | _.................. | 1045 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 2421 | __..c..a.g......... | 2437 | 73 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 1027 | ...a............... | 1045 | 94 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 1027 | ...a............... | 1045 | 94 |
| EF667343.1 | Simian enterovirus 46 strain RNM5, complete genome | 1012 | .........t........_ | 1029 | 89 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 1025 | .........g........_ | 1042 | 89 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 1024 | .........g........_ | 1041 | 89 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 1023 | .........g........_ | 1040 | 89 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 1023 | .........g........_ | 1040 | 89 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 1022 | ...a.............._ | 1039 | 89 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 1024 | ...a.............._ | 1041 | 89 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 1025 | ...a.............._ | 1042 | 89 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 1024 | ...a.............._ | 1041 | 89 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 1024 | ...a.............._ | 1041 | 89 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 1024 | .........g........_ | 1041 | 89 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 1029 | _.....g............ | 1046 | 89 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 2422 | __..c..a.g......... | 2438 | 73 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 1024 | ...a.............._ | 1041 | 89 |
| DQ341362.1 | Human enterovirus 71 isolate SB12736-SAR-03, complete genome | 1030 | _...........a....._ | 1046 | 84 |
| AF499637.1 | Human coxsackievirus A13 strain Flores, complete genome | 1028 | _...............___ | 1042 | 78 |
| AF465511.1 | Human coxsackievirus A13 strain Flores, complete genome | 1028 | _...............___ | 1042 | 78 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 1028 | _..a.....t......... | 1045 | 84 |
| AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 963 | .........g..a....._ | 980 | 84 |
| AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 977 | .........g..a....._ | 994 | 84 |
| AJ132960.1 | Human poliovirus 1, complete genome. Isolated from faeces of immunode | 1026 | _..............____ | 1039 | 73 |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 1029 | _...........a..t.._ | 1045 | 78 |
| AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 1030 | _...........a..t.._ | 1046 | 78 |
| HQ189392.1 | Human enterovirus 71 isolate HUN/1978, complete genome | 1030 | _...........a..t.._ | 1046 | 78 |
| AB575913.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119 | 955 | _...........a..t.._ | 971 | 78 |
| AB575914.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170 | 964 | _...........a..t.._ | 980 | 78 |
| AB575915.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944 | 975 | _...........a..t.._ | 991 | 78 |
| AB575916.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161 | 966 | _...........a..t.._ | 982 | 78 |
| AB575917.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 981 | _...........a..t.._ | 997 | 78 |
| AB575918.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205 | 966 | _...........a..t.._ | 982 | 78 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 972 | _...........g..t.._ | 988 | 78 |
| AF111981.2 | Human poliovirus 1 isolate CHN-Fujian/93-8, complete genome | 1029 | _...........a...___ | 1043 | 73 |
| AY875692.1 | Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome | 1399 | ___....a.........._ | 1413 | 73 |
| AF499636.1 | Human coxsackievirus A11 strain Belgium-1, complete genome | 1029 | _...........c..____ | 1042 | 68 |
| AF499638.1 | Human coxsackievirus A15 strain G9, complete genome | 1017 | _...........g..____ | 1030 | 68 |
| AF465512.1 | Human coxsackievirus A15 strain G-9, complete genome | 1017 | _...........g..____ | 1030 | 68 |
| AF111953.2 | Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome | 1029 | _...........a..____ | 1042 | 68 |
| AF111961.2 | Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome | 1029 | _...........a..____ | 1042 | 68 |
| AF111966.2 | Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome | 1029 | _...........a..____ | 1042 | 68 |
| AF111983.3 | Human poliovirus 1 isolate CHN-Henan/91-3, complete genome | 1029 | _...........a..____ | 1042 | 68 |
| EF555644.1 | Human enterovirus 99, complete genome | 1028 | _...........g..____ | 1041 | 68 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 2161 | ...........gc..____ | 2175 | 68 |
| X67706.1 | Coxsackievirus B5 complete genome | 4193 | ____..........c..__ | 4205 | 63 |
| AY302539.1 | Human echovirus 13 strain Del Carmen complete genome | 4201 | ____..........c..__ | 4213 | 63 |